Results for forward-read coverage counts:

Summary statistics for all samples:


Sample reads AssignedReads CoveredGenes Fragmented.gDNA Type Rep PCR.Cycles
B1.FA.bam B1.FA 320901 68717 8140 FA gDNA 1 5
B10.Lib18c.bam B10.Lib18c 103825 27231 5057 FC Plasmid 1 18
B11.Lib18c.bam B11.Lib18c 100855 25011 4791 FC Plasmid 2 18
B12.Lib18c.bam B12.Lib18c 77922 20119 4589 FC Plasmid 3 18
B2.FA.bam B2.FA 340395 73224 8170 FA gDNA 2 5
B3.FA.bam B3.FA 240107 55003 7987 FA gDNA 3 5
B4.FC.bam B4.FC 126458 30410 7499 FC gDNA 1 5
B5.FC.bam B5.FC 138363 33894 7646 FC gDNA 2 5
B6.FC.bam B6.FC 141907 34741 7652 FC gDNA 3 5
B7.F18c.bam B7.F18c 55128 12767 5647 FC gDNA 1 18
B8.F18c.bam B8.F18c 184908 40390 7794 FC gDNA 2 18
B9.F18c.bam B9.F18c 238117 54046 8014 FC gDNA 3 18
C1.LibC1.bam C1.LibC1 118208 25221 1529 FC Plasmid 1 5
C2.LibC2.bam C2.LibC2 149129 32818 1553 FC Plasmid 2 5
C3.LibC1.bam C3.LibC1 83880 19266 1484 FC Plasmid 3 5
C4.LibC2.bam C4.LibC2 66355 19531 5588 FC Plasmid 1 5
C5.LibC2.bam C5.LibC2 111108 31626 6375 FC Plasmid 2 5
C6.LibC2.bam C6.LibC2 63937 18322 5566 FC Plasmid 3 5
C7.LibC3.bam C7.LibC3 63849 17471 1982 FC Plasmid 1 5
C8.LibC3.bam C8.LibC3 92794 24661 2096 FC Plasmid 2 5
C9.LibC3.bam C9.LibC3 71244 19713 2045 FC Plasmid 3 5
D10.FB.1.bam D10.FB.1 881505 207082 8299 FB gDNA 1 5
D11.FB.2.bam D11.FB.2 692763 161970 8295 FB gDNA 2 5
D12.FB.3.bam D12.FB.3 976855 229529 8305 FB gDNA 3 5
F1.LibB1.1.bam F1.LibB1.1 972753 277801 7767 FB Plasmid 1 5
F10.LibB4.1.bam F10.LibB4.1 1524301 331059 6549 FB Plasmid 1 5
F11.LibB4.2.bam F11.LibB4.2 1343977 298159 6472 FB Plasmid 2 5
F12.LibB4.3.bam F12.LibB4.3 2165943 483546 6739 FB Plasmid 3 5
F2.LibB1.2.bam F2.LibB1.2 853610 240547 7759 FB Plasmid 2 5
F3.LibB1.3.bam F3.LibB1.3 976763 275783 7783 FB Plasmid 3 5
F4.LibB2.1.bam F4.LibB2.1 950822 282794 8067 FB Plasmid 1 5
F5.LibB2.2.bam F5.LibB2.2 1123212 331428 8111 FB Plasmid 2 5
F6.LibB2.3.bam F6.LibB2.3 1147730 336278 8099 FB Plasmid 3 5
F7.LibB3.1.bam F7.LibB3.1 992325 291167 8094 FB Plasmid 1 5
F8.LibB3.2.bam F8.LibB3.2 1828332 535994 8172 FB Plasmid 2 5
F9.LibB3.3.bam F9.LibB3.3 1514682 440111 8135 FB Plasmid 3 5
gLibA.A5.bam gLibA.A5 180884 50297 173 FA Plasmid 1 5
gLibA.A6.bam gLibA.A6 264725 72247 172 FA Plasmid 2 5
gLibA.A7.bam gLibA.A7 384836 100330 172 FA Plasmid 3 5

How does gene coverage correspond to mapping depth?



### What is the distribution of number of reads mapped per gene?

### What is read coverage like across all genes, and do samples cluster by prep?

### How consistently are genes targeted across samples?
### Are any genes not covered in most/all samples?

Results for reverse-read coverage counts:

Summary statistics for all samples:


Sample reads AssignedReads CoveredGenes Fragmented.gDNA Type Rep PCR.Cycles
B1.FA.bam B1.FA 320901 70071 8153 FA gDNA 1 5
B10.Lib18c.bam B10.Lib18c 103825 27457 5038 FC Plasmid 1 18
B11.Lib18c.bam B11.Lib18c 100855 25671 4747 FC Plasmid 2 18
B12.Lib18c.bam B12.Lib18c 77922 20256 4582 FC Plasmid 3 18
B2.FA.bam B2.FA 340395 75410 8199 FA gDNA 2 5
B3.FA.bam B3.FA 240107 56501 8021 FA gDNA 3 5
B4.FC.bam B4.FC 126458 30932 7554 FC gDNA 1 5
B5.FC.bam B5.FC 138363 35027 7699 FC gDNA 2 5
B6.FC.bam B6.FC 141907 34713 7648 FC gDNA 3 5
B7.F18c.bam B7.F18c 55128 13002 5657 FC gDNA 1 18
B8.F18c.bam B8.F18c 184908 40486 7753 FC gDNA 2 18
B9.F18c.bam B9.F18c 238117 56420 8032 FC gDNA 3 18
C1.LibC1.bam C1.LibC1 118208 25990 1520 FC Plasmid 1 5
C2.LibC2.bam C2.LibC2 149129 34663 1556 FC Plasmid 2 5
C3.LibC1.bam C3.LibC1 83880 20280 1496 FC Plasmid 3 5
C4.LibC2.bam C4.LibC2 66355 18476 5524 FC Plasmid 1 5
C5.LibC2.bam C5.LibC2 111108 30655 6316 FC Plasmid 2 5
C6.LibC2.bam C6.LibC2 63937 17787 5543 FC Plasmid 3 5
C7.LibC3.bam C7.LibC3 63849 17293 1982 FC Plasmid 1 5
C8.LibC3.bam C8.LibC3 92794 24643 2118 FC Plasmid 2 5
C9.LibC3.bam C9.LibC3 71244 19796 2029 FC Plasmid 3 5
D10.FB.1.bam D10.FB.1 881505 210038 8300 FB gDNA 1 5
D11.FB.2.bam D11.FB.2 692763 165333 8292 FB gDNA 2 5
D12.FB.3.bam D12.FB.3 976855 234844 8298 FB gDNA 3 5
F1.LibB1.1.bam F1.LibB1.1 972753 273129 7794 FB Plasmid 1 5
F10.LibB4.1.bam F10.LibB4.1 1524301 337594 6576 FB Plasmid 1 5
F11.LibB4.2.bam F11.LibB4.2 1343977 304776 6559 FB Plasmid 2 5
F12.LibB4.3.bam F12.LibB4.3 2165943 492896 6757 FB Plasmid 3 5
F2.LibB1.2.bam F2.LibB1.2 853610 236261 7780 FB Plasmid 2 5
F3.LibB1.3.bam F3.LibB1.3 976763 270950 7796 FB Plasmid 3 5
F4.LibB2.1.bam F4.LibB2.1 950822 276166 8065 FB Plasmid 1 5
F5.LibB2.2.bam F5.LibB2.2 1123212 324550 8100 FB Plasmid 2 5
F6.LibB2.3.bam F6.LibB2.3 1147730 329212 8094 FB Plasmid 3 5
F7.LibB3.1.bam F7.LibB3.1 992325 293918 8096 FB Plasmid 1 5
F8.LibB3.2.bam F8.LibB3.2 1828332 541336 8176 FB Plasmid 2 5
F9.LibB3.3.bam F9.LibB3.3 1514682 445601 8149 FB Plasmid 3 5
gLibA.A5.bam gLibA.A5 180884 46853 174 FA Plasmid 1 5
gLibA.A6.bam gLibA.A6 264725 68694 176 FA Plasmid 2 5
gLibA.A7.bam gLibA.A7 384836 95468 183 FA Plasmid 3 5

How does gene coverage correspond to mapping depth?



### What is the distribution of number of reads mapped per gene?

### What is read coverage like across all genes, and do samples cluster by prep?

### How consistently are genes targeted across samples?
### Are any genes not covered in most/all samples?

Results for bi-directional read coverage counts:

Summary statistics for all samples:


Sample reads AssignedReads CoveredGenes Fragmented.gDNA Type Rep PCR.Cycles
B1.FA.bam B1.FA 320901 133554 8290 FA gDNA 1 5
B10.Lib18c.bam B10.Lib18c 103825 51718 6667 FC Plasmid 1 18
B11.Lib18c.bam B11.Lib18c 100855 48202 6388 FC Plasmid 2 18
B12.Lib18c.bam B12.Lib18c 77922 38226 6287 FC Plasmid 3 18
B2.FA.bam B2.FA 340395 143283 8296 FA gDNA 2 5
B3.FA.bam B3.FA 240107 107690 8249 FA gDNA 3 5
B4.FC.bam B4.FC 126458 57139 8125 FC gDNA 1 5
B5.FC.bam B5.FC 138363 63981 8172 FC gDNA 2 5
B6.FC.bam B6.FC 141907 64623 8168 FC gDNA 3 5
B7.F18c.bam B7.F18c 55128 24668 7133 FC gDNA 1 18
B8.F18c.bam B8.F18c 184908 77001 8206 FC gDNA 2 18
B9.F18c.bam B9.F18c 238117 104959 8270 FC gDNA 3 18
C1.LibC1.bam C1.LibC1 118208 49502 2625 FC Plasmid 1 5
C2.LibC2.bam C2.LibC2 149129 65413 2668 FC Plasmid 2 5
C3.LibC1.bam C3.LibC1 83880 38345 2567 FC Plasmid 3 5
C4.LibC2.bam C4.LibC2 66355 35296 7053 FC Plasmid 1 5
C5.LibC2.bam C5.LibC2 111108 57707 7590 FC Plasmid 2 5
C6.LibC2.bam C6.LibC2 63937 33457 7077 FC Plasmid 3 5
C7.LibC3.bam C7.LibC3 63849 32132 3329 FC Plasmid 1 5
C8.LibC3.bam C8.LibC3 92794 45723 3527 FC Plasmid 2 5
C9.LibC3.bam C9.LibC3 71244 36603 3426 FC Plasmid 3 5
D10.FB.1.bam D10.FB.1 881505 393702 8308 FB gDNA 1 5
D11.FB.2.bam D11.FB.2 692763 309056 8304 FB gDNA 2 5
D12.FB.3.bam D12.FB.3 976855 438327 8310 FB gDNA 3 5
F1.LibB1.1.bam F1.LibB1.1 972753 518536 8210 FB Plasmid 1 5
F10.LibB4.1.bam F10.LibB4.1 1524301 632640 7721 FB Plasmid 1 5
F11.LibB4.2.bam F11.LibB4.2 1343977 570696 7698 FB Plasmid 2 5
F12.LibB4.3.bam F12.LibB4.3 2165943 924037 7814 FB Plasmid 3 5
F2.LibB1.2.bam F2.LibB1.2 853610 449284 8213 FB Plasmid 2 5
F3.LibB1.3.bam F3.LibB1.3 976763 514811 8216 FB Plasmid 3 5
F4.LibB2.1.bam F4.LibB2.1 950822 526525 8275 FB Plasmid 1 5
F5.LibB2.2.bam F5.LibB2.2 1123212 617794 8280 FB Plasmid 2 5
F6.LibB2.3.bam F6.LibB2.3 1147730 627129 8276 FB Plasmid 3 5
F7.LibB3.1.bam F7.LibB3.1 992325 550862 8269 FB Plasmid 1 5
F8.LibB3.2.bam F8.LibB3.2 1828332 1014373 8292 FB Plasmid 2 5
F9.LibB3.3.bam F9.LibB3.3 1514682 834700 8287 FB Plasmid 3 5
gLibA.A5.bam gLibA.A5 180884 94633 339 FA Plasmid 1 5
gLibA.A6.bam gLibA.A6 264725 137146 340 FA Plasmid 2 5
gLibA.A7.bam gLibA.A7 384836 190577 346 FA Plasmid 3 5

How does gene coverage correspond to mapping depth?



### What is the distribution of number of reads mapped per gene?

### What is read coverage like across all genes, and do samples cluster by prep?

### How consistently are genes targeted across samples?
### Are any genes not covered in most/all samples?