| Sample | reads | AssignedReads | CoveredGenes | Fragmented.gDNA | Type | Rep | PCR.Cycles | |
|---|---|---|---|---|---|---|---|---|
| B1.FA.bam | B1.FA | 320901 | 68717 | 8140 | FA | gDNA | 1 | 5 |
| B10.Lib18c.bam | B10.Lib18c | 103825 | 27231 | 5057 | FC | Plasmid | 1 | 18 |
| B11.Lib18c.bam | B11.Lib18c | 100855 | 25011 | 4791 | FC | Plasmid | 2 | 18 |
| B12.Lib18c.bam | B12.Lib18c | 77922 | 20119 | 4589 | FC | Plasmid | 3 | 18 |
| B2.FA.bam | B2.FA | 340395 | 73224 | 8170 | FA | gDNA | 2 | 5 |
| B3.FA.bam | B3.FA | 240107 | 55003 | 7987 | FA | gDNA | 3 | 5 |
| B4.FC.bam | B4.FC | 126458 | 30410 | 7499 | FC | gDNA | 1 | 5 |
| B5.FC.bam | B5.FC | 138363 | 33894 | 7646 | FC | gDNA | 2 | 5 |
| B6.FC.bam | B6.FC | 141907 | 34741 | 7652 | FC | gDNA | 3 | 5 |
| B7.F18c.bam | B7.F18c | 55128 | 12767 | 5647 | FC | gDNA | 1 | 18 |
| B8.F18c.bam | B8.F18c | 184908 | 40390 | 7794 | FC | gDNA | 2 | 18 |
| B9.F18c.bam | B9.F18c | 238117 | 54046 | 8014 | FC | gDNA | 3 | 18 |
| C1.LibC1.bam | C1.LibC1 | 118208 | 25221 | 1529 | FC | Plasmid | 1 | 5 |
| C2.LibC2.bam | C2.LibC2 | 149129 | 32818 | 1553 | FC | Plasmid | 2 | 5 |
| C3.LibC1.bam | C3.LibC1 | 83880 | 19266 | 1484 | FC | Plasmid | 3 | 5 |
| C4.LibC2.bam | C4.LibC2 | 66355 | 19531 | 5588 | FC | Plasmid | 1 | 5 |
| C5.LibC2.bam | C5.LibC2 | 111108 | 31626 | 6375 | FC | Plasmid | 2 | 5 |
| C6.LibC2.bam | C6.LibC2 | 63937 | 18322 | 5566 | FC | Plasmid | 3 | 5 |
| C7.LibC3.bam | C7.LibC3 | 63849 | 17471 | 1982 | FC | Plasmid | 1 | 5 |
| C8.LibC3.bam | C8.LibC3 | 92794 | 24661 | 2096 | FC | Plasmid | 2 | 5 |
| C9.LibC3.bam | C9.LibC3 | 71244 | 19713 | 2045 | FC | Plasmid | 3 | 5 |
| D10.FB.1.bam | D10.FB.1 | 881505 | 207082 | 8299 | FB | gDNA | 1 | 5 |
| D11.FB.2.bam | D11.FB.2 | 692763 | 161970 | 8295 | FB | gDNA | 2 | 5 |
| D12.FB.3.bam | D12.FB.3 | 976855 | 229529 | 8305 | FB | gDNA | 3 | 5 |
| F1.LibB1.1.bam | F1.LibB1.1 | 972753 | 277801 | 7767 | FB | Plasmid | 1 | 5 |
| F10.LibB4.1.bam | F10.LibB4.1 | 1524301 | 331059 | 6549 | FB | Plasmid | 1 | 5 |
| F11.LibB4.2.bam | F11.LibB4.2 | 1343977 | 298159 | 6472 | FB | Plasmid | 2 | 5 |
| F12.LibB4.3.bam | F12.LibB4.3 | 2165943 | 483546 | 6739 | FB | Plasmid | 3 | 5 |
| F2.LibB1.2.bam | F2.LibB1.2 | 853610 | 240547 | 7759 | FB | Plasmid | 2 | 5 |
| F3.LibB1.3.bam | F3.LibB1.3 | 976763 | 275783 | 7783 | FB | Plasmid | 3 | 5 |
| F4.LibB2.1.bam | F4.LibB2.1 | 950822 | 282794 | 8067 | FB | Plasmid | 1 | 5 |
| F5.LibB2.2.bam | F5.LibB2.2 | 1123212 | 331428 | 8111 | FB | Plasmid | 2 | 5 |
| F6.LibB2.3.bam | F6.LibB2.3 | 1147730 | 336278 | 8099 | FB | Plasmid | 3 | 5 |
| F7.LibB3.1.bam | F7.LibB3.1 | 992325 | 291167 | 8094 | FB | Plasmid | 1 | 5 |
| F8.LibB3.2.bam | F8.LibB3.2 | 1828332 | 535994 | 8172 | FB | Plasmid | 2 | 5 |
| F9.LibB3.3.bam | F9.LibB3.3 | 1514682 | 440111 | 8135 | FB | Plasmid | 3 | 5 |
| gLibA.A5.bam | gLibA.A5 | 180884 | 50297 | 173 | FA | Plasmid | 1 | 5 |
| gLibA.A6.bam | gLibA.A6 | 264725 | 72247 | 172 | FA | Plasmid | 2 | 5 |
| gLibA.A7.bam | gLibA.A7 | 384836 | 100330 | 172 | FA | Plasmid | 3 | 5 |
### What is the distribution of number of reads mapped per gene?
### What is read coverage like across all genes, and do samples cluster by prep?
### How consistently are genes targeted across samples? ### Are any genes not covered in most/all samples?
| Sample | reads | AssignedReads | CoveredGenes | Fragmented.gDNA | Type | Rep | PCR.Cycles | |
|---|---|---|---|---|---|---|---|---|
| B1.FA.bam | B1.FA | 320901 | 70071 | 8153 | FA | gDNA | 1 | 5 |
| B10.Lib18c.bam | B10.Lib18c | 103825 | 27457 | 5038 | FC | Plasmid | 1 | 18 |
| B11.Lib18c.bam | B11.Lib18c | 100855 | 25671 | 4747 | FC | Plasmid | 2 | 18 |
| B12.Lib18c.bam | B12.Lib18c | 77922 | 20256 | 4582 | FC | Plasmid | 3 | 18 |
| B2.FA.bam | B2.FA | 340395 | 75410 | 8199 | FA | gDNA | 2 | 5 |
| B3.FA.bam | B3.FA | 240107 | 56501 | 8021 | FA | gDNA | 3 | 5 |
| B4.FC.bam | B4.FC | 126458 | 30932 | 7554 | FC | gDNA | 1 | 5 |
| B5.FC.bam | B5.FC | 138363 | 35027 | 7699 | FC | gDNA | 2 | 5 |
| B6.FC.bam | B6.FC | 141907 | 34713 | 7648 | FC | gDNA | 3 | 5 |
| B7.F18c.bam | B7.F18c | 55128 | 13002 | 5657 | FC | gDNA | 1 | 18 |
| B8.F18c.bam | B8.F18c | 184908 | 40486 | 7753 | FC | gDNA | 2 | 18 |
| B9.F18c.bam | B9.F18c | 238117 | 56420 | 8032 | FC | gDNA | 3 | 18 |
| C1.LibC1.bam | C1.LibC1 | 118208 | 25990 | 1520 | FC | Plasmid | 1 | 5 |
| C2.LibC2.bam | C2.LibC2 | 149129 | 34663 | 1556 | FC | Plasmid | 2 | 5 |
| C3.LibC1.bam | C3.LibC1 | 83880 | 20280 | 1496 | FC | Plasmid | 3 | 5 |
| C4.LibC2.bam | C4.LibC2 | 66355 | 18476 | 5524 | FC | Plasmid | 1 | 5 |
| C5.LibC2.bam | C5.LibC2 | 111108 | 30655 | 6316 | FC | Plasmid | 2 | 5 |
| C6.LibC2.bam | C6.LibC2 | 63937 | 17787 | 5543 | FC | Plasmid | 3 | 5 |
| C7.LibC3.bam | C7.LibC3 | 63849 | 17293 | 1982 | FC | Plasmid | 1 | 5 |
| C8.LibC3.bam | C8.LibC3 | 92794 | 24643 | 2118 | FC | Plasmid | 2 | 5 |
| C9.LibC3.bam | C9.LibC3 | 71244 | 19796 | 2029 | FC | Plasmid | 3 | 5 |
| D10.FB.1.bam | D10.FB.1 | 881505 | 210038 | 8300 | FB | gDNA | 1 | 5 |
| D11.FB.2.bam | D11.FB.2 | 692763 | 165333 | 8292 | FB | gDNA | 2 | 5 |
| D12.FB.3.bam | D12.FB.3 | 976855 | 234844 | 8298 | FB | gDNA | 3 | 5 |
| F1.LibB1.1.bam | F1.LibB1.1 | 972753 | 273129 | 7794 | FB | Plasmid | 1 | 5 |
| F10.LibB4.1.bam | F10.LibB4.1 | 1524301 | 337594 | 6576 | FB | Plasmid | 1 | 5 |
| F11.LibB4.2.bam | F11.LibB4.2 | 1343977 | 304776 | 6559 | FB | Plasmid | 2 | 5 |
| F12.LibB4.3.bam | F12.LibB4.3 | 2165943 | 492896 | 6757 | FB | Plasmid | 3 | 5 |
| F2.LibB1.2.bam | F2.LibB1.2 | 853610 | 236261 | 7780 | FB | Plasmid | 2 | 5 |
| F3.LibB1.3.bam | F3.LibB1.3 | 976763 | 270950 | 7796 | FB | Plasmid | 3 | 5 |
| F4.LibB2.1.bam | F4.LibB2.1 | 950822 | 276166 | 8065 | FB | Plasmid | 1 | 5 |
| F5.LibB2.2.bam | F5.LibB2.2 | 1123212 | 324550 | 8100 | FB | Plasmid | 2 | 5 |
| F6.LibB2.3.bam | F6.LibB2.3 | 1147730 | 329212 | 8094 | FB | Plasmid | 3 | 5 |
| F7.LibB3.1.bam | F7.LibB3.1 | 992325 | 293918 | 8096 | FB | Plasmid | 1 | 5 |
| F8.LibB3.2.bam | F8.LibB3.2 | 1828332 | 541336 | 8176 | FB | Plasmid | 2 | 5 |
| F9.LibB3.3.bam | F9.LibB3.3 | 1514682 | 445601 | 8149 | FB | Plasmid | 3 | 5 |
| gLibA.A5.bam | gLibA.A5 | 180884 | 46853 | 174 | FA | Plasmid | 1 | 5 |
| gLibA.A6.bam | gLibA.A6 | 264725 | 68694 | 176 | FA | Plasmid | 2 | 5 |
| gLibA.A7.bam | gLibA.A7 | 384836 | 95468 | 183 | FA | Plasmid | 3 | 5 |
### What is the distribution of number of reads mapped per gene?
### What is read coverage like across all genes, and do samples cluster by prep?
### How consistently are genes targeted across samples? ### Are any genes not covered in most/all samples?
| Sample | reads | AssignedReads | CoveredGenes | Fragmented.gDNA | Type | Rep | PCR.Cycles | |
|---|---|---|---|---|---|---|---|---|
| B1.FA.bam | B1.FA | 320901 | 133554 | 8290 | FA | gDNA | 1 | 5 |
| B10.Lib18c.bam | B10.Lib18c | 103825 | 51718 | 6667 | FC | Plasmid | 1 | 18 |
| B11.Lib18c.bam | B11.Lib18c | 100855 | 48202 | 6388 | FC | Plasmid | 2 | 18 |
| B12.Lib18c.bam | B12.Lib18c | 77922 | 38226 | 6287 | FC | Plasmid | 3 | 18 |
| B2.FA.bam | B2.FA | 340395 | 143283 | 8296 | FA | gDNA | 2 | 5 |
| B3.FA.bam | B3.FA | 240107 | 107690 | 8249 | FA | gDNA | 3 | 5 |
| B4.FC.bam | B4.FC | 126458 | 57139 | 8125 | FC | gDNA | 1 | 5 |
| B5.FC.bam | B5.FC | 138363 | 63981 | 8172 | FC | gDNA | 2 | 5 |
| B6.FC.bam | B6.FC | 141907 | 64623 | 8168 | FC | gDNA | 3 | 5 |
| B7.F18c.bam | B7.F18c | 55128 | 24668 | 7133 | FC | gDNA | 1 | 18 |
| B8.F18c.bam | B8.F18c | 184908 | 77001 | 8206 | FC | gDNA | 2 | 18 |
| B9.F18c.bam | B9.F18c | 238117 | 104959 | 8270 | FC | gDNA | 3 | 18 |
| C1.LibC1.bam | C1.LibC1 | 118208 | 49502 | 2625 | FC | Plasmid | 1 | 5 |
| C2.LibC2.bam | C2.LibC2 | 149129 | 65413 | 2668 | FC | Plasmid | 2 | 5 |
| C3.LibC1.bam | C3.LibC1 | 83880 | 38345 | 2567 | FC | Plasmid | 3 | 5 |
| C4.LibC2.bam | C4.LibC2 | 66355 | 35296 | 7053 | FC | Plasmid | 1 | 5 |
| C5.LibC2.bam | C5.LibC2 | 111108 | 57707 | 7590 | FC | Plasmid | 2 | 5 |
| C6.LibC2.bam | C6.LibC2 | 63937 | 33457 | 7077 | FC | Plasmid | 3 | 5 |
| C7.LibC3.bam | C7.LibC3 | 63849 | 32132 | 3329 | FC | Plasmid | 1 | 5 |
| C8.LibC3.bam | C8.LibC3 | 92794 | 45723 | 3527 | FC | Plasmid | 2 | 5 |
| C9.LibC3.bam | C9.LibC3 | 71244 | 36603 | 3426 | FC | Plasmid | 3 | 5 |
| D10.FB.1.bam | D10.FB.1 | 881505 | 393702 | 8308 | FB | gDNA | 1 | 5 |
| D11.FB.2.bam | D11.FB.2 | 692763 | 309056 | 8304 | FB | gDNA | 2 | 5 |
| D12.FB.3.bam | D12.FB.3 | 976855 | 438327 | 8310 | FB | gDNA | 3 | 5 |
| F1.LibB1.1.bam | F1.LibB1.1 | 972753 | 518536 | 8210 | FB | Plasmid | 1 | 5 |
| F10.LibB4.1.bam | F10.LibB4.1 | 1524301 | 632640 | 7721 | FB | Plasmid | 1 | 5 |
| F11.LibB4.2.bam | F11.LibB4.2 | 1343977 | 570696 | 7698 | FB | Plasmid | 2 | 5 |
| F12.LibB4.3.bam | F12.LibB4.3 | 2165943 | 924037 | 7814 | FB | Plasmid | 3 | 5 |
| F2.LibB1.2.bam | F2.LibB1.2 | 853610 | 449284 | 8213 | FB | Plasmid | 2 | 5 |
| F3.LibB1.3.bam | F3.LibB1.3 | 976763 | 514811 | 8216 | FB | Plasmid | 3 | 5 |
| F4.LibB2.1.bam | F4.LibB2.1 | 950822 | 526525 | 8275 | FB | Plasmid | 1 | 5 |
| F5.LibB2.2.bam | F5.LibB2.2 | 1123212 | 617794 | 8280 | FB | Plasmid | 2 | 5 |
| F6.LibB2.3.bam | F6.LibB2.3 | 1147730 | 627129 | 8276 | FB | Plasmid | 3 | 5 |
| F7.LibB3.1.bam | F7.LibB3.1 | 992325 | 550862 | 8269 | FB | Plasmid | 1 | 5 |
| F8.LibB3.2.bam | F8.LibB3.2 | 1828332 | 1014373 | 8292 | FB | Plasmid | 2 | 5 |
| F9.LibB3.3.bam | F9.LibB3.3 | 1514682 | 834700 | 8287 | FB | Plasmid | 3 | 5 |
| gLibA.A5.bam | gLibA.A5 | 180884 | 94633 | 339 | FA | Plasmid | 1 | 5 |
| gLibA.A6.bam | gLibA.A6 | 264725 | 137146 | 340 | FA | Plasmid | 2 | 5 |
| gLibA.A7.bam | gLibA.A7 | 384836 | 190577 | 346 | FA | Plasmid | 3 | 5 |
### What is the distribution of number of reads mapped per gene?
### What is read coverage like across all genes, and do samples cluster by prep?
### How consistently are genes targeted across samples? ### Are any genes not covered in most/all samples?